Basic Information | |
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Taxon OID | 3300032913 Open in IMG/M |
Scaffold ID | Ga0314739_1021143 Open in IMG/M |
Source Dataset Name | Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1187 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 42.3956 | Long. (o) | -85.3757 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F042104 | Metatranscriptome | 158 | N |
F042105 | Metatranscriptome | 158 | N |
Protein ID | Family | RBS | Sequence |
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Ga0314739_10211431 | F042104 | N/A | LKYKVFTLLLSSLQKRDMADKSQHQQQPAARRGGGVAPRQGRGGNAANSGGPATVFLNPERAPPLLSKWQKALGKDLERIEVIYEENGITVHLYGKEGTPYEVKDDDVVQPISVSEYKTRKEEAAKPQGEDAIFAFKNKFEVRLNQPFPEIDLGDGGEAALRRAVQALPFEQRRVMLMSNKQFKSAYPNGFAGAAGAAA |
Ga0314739_10211432 | F042105 | GGA | LAIGTWPRLDGAPDPVPPDSKSYDSRRRKWAHFIGMDFLFTQREYCQTIQSDSQGRKVLVNSTKHGDLLSVRTVPQHLLDKAWFTRKLRFPRQYLGITKMEERVSKLSFLVHVLTQRGIPTRAVLKSIKRLCLTWMFSKYEDMRKHVSSITRKLMVSGGTIRNPWVSRKDLPRNPCF |
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