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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032954 Open in IMG/M |
| Scaffold ID | Ga0335083_10000228 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 92694 |
| Total Scaffold Genes | 92 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 73 (79.35%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5052 | Long. (o) | -80.2345 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000188 | Metagenome / Metatranscriptome | 1692 | Y |
| F000536 | Metagenome / Metatranscriptome | 1044 | Y |
| F000624 | Metagenome / Metatranscriptome | 977 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000703 | Metagenome / Metatranscriptome | 928 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F000781 | Metagenome / Metatranscriptome | 895 | Y |
| F022762 | Metagenome / Metatranscriptome | 213 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335083_1000022810 | F000624 | GAG | MPIQWYGFLTAIAAGGVQFVLFLRWLHRRMRDDEIVRTFVRDIATTHLPHIYSALRDIAEQQGIELQDPPLVRFVDLHGHRRRD |
| Ga0335083_1000022814 | F000703 | GAG | MSVREYRESDLAALRTIHAAQGFDYPLPDLRNSLFVTKLIFSKEAEEKGAAEHESQQAQIVGAALLRLTAEAYLLLDPKAGTPRHRWQWLLNLHAAAERDAWQRGLEDVHAWLPPPIARTFGKRIESLGWHRDDTWTPYCKRLTAKV |
| Ga0335083_1000022816 | F000781 | GAG | MLTVAQLAPIKDHDPYLYETLTKIVASLNATSQAAGVDPATPAPAPTAVASINVQASNGWFDISVTDPSNSRPGLFYFAESDTTPAFSSPRVYFMGAARNLYLQLGNQTLYWRAYSQYVGSLPSAPVTFGSPPTAVIGGGVSGPAPLPSSGSGVLPNGQVRGGNGFGINPGSRIMRQSVL |
| Ga0335083_1000022822 | F000696 | AGGA | MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVTQTDASLQVSITDATAPPNQLPTDFLVPIKIWERPNGSMDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFIGATQDTQIRLRYAKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDEAASDAIEDLVSAAIRREQQSLRRRRPFSSRSGYTPF |
| Ga0335083_1000022823 | F000739 | GGTGG | MRRLELKQFELWLKGIVAAAVSGGAGGVLTGFAAVGIDPQHFNLRTGMGATLRIAAAAALINAVIGVAAYLQKSPLPEERGFARHDRDGN |
| Ga0335083_1000022837 | F000188 | GGAGG | MSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDFRPRLNEWVADFALAGQKALEAPDCASRMVLFRLYYLGLAPYENARHFVGLSERSWVNWTEEVRRRCGKELLLRGMFPPRKYFSNEP |
| Ga0335083_1000022843 | F000536 | GGA | MVELTPRQMQTMEKLFEAGFRPLAIPPNENVLCVRRGDCVAVLSPVPDGGLKLFASPSYLIEGNFSVRLKRGANEVFVWKKSELAATPERLQELELFRQELSEVLASWQLQ |
| Ga0335083_1000022866 | F022762 | AGGA | MGKTKESYIEKPVPAEDEEDEATLAAIDEGIADAKAGRTVPAEQVRKLLRKWTSGCLLGKIAKLSG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |