NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335083_10004992

Scaffold Ga0335083_10004992


Overview

Basic Information
Taxon OID3300032954 Open in IMG/M
Scaffold IDGa0335083_10004992 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16814
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002981Metagenome / Metatranscriptome516Y
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F014888Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0335083_1000499210F005268GAGGMSRSDEETEAQQVWRALSEAGLVEIRLDEFAERIREVKRIVVGRLHELLDIDTGVKERESAASSLGTLRGLELKVQENTPKPPDPSEM
Ga0335083_100049925F002981GGAVPAGPTINIGEEYGTAKKNLPPAKIVLLAVAAVIVVVIFASFLKRAKPQATGSLDNVAAVEIPGQNSTMVALTFTLHNTSDKILYVHNIQASVKAPDGDATADAVSAVDFERYFQAFPSLKVGAQPALPPETKIQPGETVLSTVIVVFPKTLEAFNHRQSVSVIVWPYDQQLPVTMTK
Ga0335083_100049927F014888AGGAGMNKVLEVLLTVVALAGLYSAIPASSAGPGNAVIQTEQAVVLADGSDPMPLCRGKHCK
Ga0335083_100049929F003832N/AMQSTAKLQDNEANWPPEEGEVISFKSSTGPETAILKEVRWGLVWRDFILEDGRVIPEHRISGSPQPQVWRKIDEVSDDEREECEERLLAMAEARMDPRTRDQPFWAELNQYLAYTYLRFKRTGHDVKDTGR
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