NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10078443

Scaffold Ga0335076_10078443


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10078443 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3243
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026325Metagenome / Metatranscriptome198Y
F026585Metagenome / Metatranscriptome197Y
F067465Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0335076_100784434F026325GGAGGMMTDPASAIKREVHQLVDLQIETLRQPSRLTASDLCDYRVRSEKITTLFHELDQLRRAHFERPLRRAS
Ga0335076_100784436F067465N/AVIGLPLDVTFPRLRGIRWRYCTRWDEGPAAVLGICLLRLGICQPNDWSGSAVDFVERGFRSFCAQNRAADVKRVWVGDLRITDSLFELTEQERNQVEAEREGLADHLYLIGDYEAAASIPIGATLAHL
Ga0335076_100784437F026585AGGAGMWMEDLSDEELEASIYRKVDLEIPACIKNHCKTVKYKGARILLREIRPHTSVARELIRHLREMDAHGQGHEHAWPGQISEKGVPGIETWLSDAEYSRPGCLITWYENDAINACFDEEAQHMGENGPCQPNVALPIRLGKSAKELDEEVRRIFDHASAMLRSLASAAKIVELVRDLYDEYLREHRLESGLPAEPGPAGVREEQL
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Institute for Fundamental Biomedical Research
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