NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314752_1045697

Scaffold Ga0314752_1045697


Overview

Basic Information
Taxon OID3300032976 Open in IMG/M
Scaffold IDGa0314752_1045697 Open in IMG/M
Source Dataset NameMetatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)838
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3951Long. (o)-85.3736Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042105Metatranscriptome158N

Sequences

Protein IDFamilyRBSSequence
Ga0314752_10456971F042105AGGLRDKVYNDCGQAPIGLAIGTWPRLDGAPDPVRPDSKSYDSRRRKWAHFIGMDFLFTQREYCQTIQSDSQGCKVLVNSTKHGDLLSVRPVPQHLLDKAWFTRKLRYPRQYLGITKMEERVSKLSFLVHVLTQRGIPTRAVLKSIKRLCLTWMFSKYEDMRKHVSSITRKLMVSGGTIRNPWVSRKDLPRNPCFHGEKIHANGLVAPLWSRSPPVRRDLAH
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