NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335084_10209645

Scaffold Ga0335084_10209645


Overview

Basic Information
Taxon OID3300033004 Open in IMG/M
Scaffold IDGa0335084_10209645 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2023
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000822Metagenome / Metatranscriptome876Y
F013028Metagenome / Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0335084_102096453F000822GGAMCVTAAWGQSAQIFHGEVSDSQCALNVHSLTRSHQEMLKSKSMGGTANTCAVYCVEHLGGYLVLSSGKNVYRLDRSDLVHGFEGRKVVLSGVLDPKLNQIHVLKIDLEEKP
Ga0335084_102096454F013028N/ATRVDGWDLLLKPGKQEFALTAPSEPGAYEVVCTVICSEDHEGMHMKFTVVP

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