Scaffold Ga0335073_10000822

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335073_10000822

Scaffold Ga0335073_10000822

Overview

Basic Information
Taxon OID	3300033134 Open in IMG/M
Scaffold ID	Ga0335073_10000822 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	40700
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (72.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5059	Long. (^o)	-80.2517	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048954	Metagenome	147	Y
F104378	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335073_1000082217	F048954	AGG	MSRRRAQHDPLEPTSEPRWYVVRSMHGTVLESRRLPEGADLKRAFLDAMLKWLDEGWLVGEFSSASAAFFCHRNPERRMVSIDPTDPYEVPMYGGAHLGGCPGCGE
Ga0335073_1000082220	F104378	N/A	MIRKQARHALAAVTVVLAFASGPSSVAQTPEQEKAWEADRERASAIEKAKAEQLARERAARKADPMAWVRTLDPMTSGGWEFRSVATDGSWAIFSSTHQLKRSGQIVTVWMRHEYAEAQTGDAGPYLSAVEKAQYDCKKEQTRSLMVIYYSANNIQGNEQTEEAEGKNTPWNAVVPGTREESNFVWACAQGRGAGAR

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