NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335073_10073057

Scaffold Ga0335073_10073057


Overview

Basic Information
Taxon OID3300033134 Open in IMG/M
Scaffold IDGa0335073_10073057 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4505
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (36.84%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011239Metagenome / Metatranscriptome293Y
F059473Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0335073_1007305714F011239AGGCGGMLDVELLKSIATQLMTSTFVIVGGKSVPVRRTSSQRLTTAAFSVDGHRYQAIEQNPEKPSRWGQLARSGHQVVQFKDAEHNKFVAVVVDDEVTLYGANRQRS
Ga0335073_1007305716F059473N/AMPAEKERGALLIAACLIAAIRLRGEPIQPSPKLRATIYDSVQLAVLVWREIQGHRGAPLN

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