NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325402_1029942

Scaffold Ga0325402_1029942


Overview

Basic Information
Taxon OID3300033160 Open in IMG/M
Scaffold IDGa0325402_1029942 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4542
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000201Metagenome1621Y
F088134Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0325402_10299422F088134AGGMFMNSGRPKSAVFKFKVWPQKRNQNLFCNPAQTLLSILPIAGVLEGKMTSNLVGGRIRQFPTTFMKTTYSNSDASNDISSRQELEGYPLRPPQALFSILAMSRALVIQML
Ga0325402_10299423F000201N/AMPAFNISIYLKLKLSYIIRLVIIKHALVKELLILQVQNDDIKP

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