NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1104051

Scaffold Ga0272423_1104051


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1104051 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1592
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049317Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_11040512F049317AGGMHRVPGTAAVQQCQVTAVLYGVHNLIGVSAVTNKVVFSLGCRAALVHAACRGF
Ga0272423_11040513F049317N/AMQRVLGTVAVQQYGVTAELYGVQNLIGVTAVTNKAVFGLGCRAALVHAACTVF
Ga0272423_11040514F049317AGCAGMHRVLGFVAVQQCQVTAELYGVQNLIGVNAVPTKAVFSLGCRAALVHAACRGF
Ga0272423_11040515F049317AGGMHRVLGTVGVQQYWVTAELYDVHNFIGVNAVPNKVVFSLGCRAAVVQAACTGS
Ga0272423_11040517F049317N/AMHRVLGIAAVQQCLVTAELYGVHNLIGVNAVTNKAVFGLGCRAVLVHAACTGF
Ga0272423_11040518F049317N/AGCFWLGVQSSIGACSMHRVLGPVAVQQYWVTAELYGVHNLIGVTAVTNKAVFGLGCRAVLVHAACTGF
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