NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000037

Scaffold Ga0307507_10000037


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000037 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)185962
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (50.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F014479Metagenome / Metatranscriptome262Y
F020829Metagenome221Y
F032105Metagenome180Y
F041034Metagenome160Y
F056213Metagenome137Y
F064278Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000003717F014479N/AVGPKGFQLLFSSVITIIEGVCVFLSVTNNRRCARVFKLLVHLGIRACSAILPRGLYCRNLLLLEGPSCLSATAVYKVFIEFPFRLLRDFKGEW
Ga0307507_1000003719F000247N/AMYIILSYKRTPRIEVARTNCLTSSLNIFIDITLVSSSSVPFAYLSIGGKPYYNSGLSLNKSIDLTSTGL
Ga0307507_1000003721F064278N/AMPLANAYCNTLINPTIVICFNYGKDGYFTMSYPELKNIGNIKKIEEEETSNKLKKEEP
Ga0307507_1000003727F041034GAGMWFSIISRFLVDIGGILILVEFGGILRLVELGGLFRYRVDVSRNFRLVDSGGFFRF
Ga0307507_1000003728F056213N/AVNFGVRRSILLYRLLITFMLALRAPSRSTPIREVFSLGFRDLIRLLISAELF
Ga0307507_1000003733F032105GGAGVDIIAIAKVPQLKPVRIIDILKGNILSLIVIADKVLLKTIKVTIGNCLIYIPKVIRLFFKPLLLPLMEPY
Ga0307507_1000003737F056213N/AVDFSVRRSILLYHLLIIFTQALRASGRSIPIREAFNLGLRDLIRLLTSVESF
Ga0307507_1000003746F020829AGGAMPSVSSKLIANIIFSVYRTPLTLGLYTLIIYTGPLYIWIIIIVISGLTACYNYKDRLIALLIIKHTHIAAFSLYRSWDS
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