Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000066 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	160540
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (70.97%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

160540

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (70.97%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F003725	Metagenome	471	Y
F009949	Metagenome	310	Y
F017572	Metagenome	240	Y
F032105	Metagenome	180	Y
F038017	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100000661	F002220	AGG	VHPLKSNSVIKLSFSFSFAIRFAFTNLSSLRAKNWSSPKIIILLVYMLTILNGVPMVIIRKHRLNIKVVIKSFSL
Ga0307507_1000006612	F009949	AGG	MVNTIGGKHLRALRRPNKGRKYNSNTPKNRNNRTKKLALLGRYPNR
Ga0307507_1000006615	F003725	GGAG	MNLYKDLKEIAKLVQERIKKYYNTKRSKGPDLKEGDKV
Ga0307507_1000006620	F017572	N/A	MLEPVYKDIKPPVYKADIYRGQKEDKWQVSKIISYKDVDNKT
Ga0307507_1000006622	F000630	GAG	MGVKGTEVDLGKGNLSHSMGNTIGGKYLRALKGPNKGRKYNSNTLKDRNNRTKRLASLGRCLSR
Ga0307507_1000006625	F032105	AGGA	MITAKVPQLKLVRMMDILKGNVLSLTVMADKILLKTIKVTVSNCLIYIPKVTKLFFKPLLLPLIEPY
Ga0307507_1000006629	F000247	AGG	VHTYIISIALSYKRILCTEVACTNCLASSLNIFIGKTLVPSSSAPFTYLFIDRKPYYNSSLSLNKSIDPTSIGL
Ga0307507_1000006630	F000630	GGAG	MGVKGIEVGLGKGNPSYSMGNTMGGKYLRALRGPNKGRKYNSNTFKDRNNRTKRLASLGRCSSG
Ga0307507_100000666	F000247	AGG	VYTYVIYIALNYKRTPHIEVARTSCLASSLNIFIGKTLVPSSNVLFAYPFVDGKLYYNSGLSLNKSIDPTSTGL
Ga0307507_100000668	F038017	GAG	VVRLTKYRFKLKDKDKLRVNLKHIAYYTLSWIAYMDNIYNIHRAPKDKNQKYPVRIY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000066

Overview

Ecosystem & Geography

Associated Families

Sequences