NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000210

Scaffold Ga0307507_10000210


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000210 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)110754
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (56.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003725Metagenome471Y
F032105Metagenome180Y
F038017Metagenome166Y
F056201Metagenome137Y
F078226Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000021022F003725N/AMETLINLYNYLKETAKLVQIRMKRYYNTKRSKGPDLKEGDKV
Ga0307507_1000021025F038017GAGVVRLTKYRFKLKDKDKLRVNLKHAAYYILLWIAYMDNIYNIYRAPKDKNQKYLVRIY
Ga0307507_1000021026F056201N/AMAPSRSIRLRGLNTLTRKIPYGRMPRGMIVVGVPREHLSIAYRGKEMN
Ga0307507_100002106F078226N/AMLDIDANKNTNNNNSKEELEDPNGYYLILFGTLTIDKATSISVELANKACAYLLTITPMEPTTETNPFNYNIITTALCYTSIIFIGVIINTNTLKKSMAGYR
Ga0307507_100002109F032105GGAGVDIIITAKALQLKPVRIIDILKGNVLSLIVIADKILLKTIKVTVRDCLVYMPKVTRLFFKPLLPPLIEPY
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