Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000290 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	99961
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (41.18%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

99961

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (41.18%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000746	Metagenome	908	Y
F027375	Metagenome	194	Y
F032886	Metagenome	178	Y
F038927	Metagenome / Metatranscriptome	164	Y
F041673	Metagenome	159	Y
F056201	Metagenome	137	Y
F065308	Metagenome	127	Y
F081096	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100002901	F000746	N/A	MIITGLIKYIVAVVGNMEEGTININYKVIIEVLIEVYFKVIARRSAIFIRSQIAS
Ga0307507_1000029014	F056201	N/A	MAPSRSIKLWGPNTLTRKIPDGKIPRGIIVVELSREYLSMACRGKEIN
Ga0307507_100002902	F027375	N/A	MVPLLDIIPFNVLNKSYRFKNRCAGSTTMIIIIIIAKYPKNFIYLLTITRIVLATSLVFILVGGKPIIKSIINSNIGPCGI
Ga0307507_1000029020	F081096	N/A	MHTYRGGYRGNTGQLYKDLTVKDTGQLIKGGDTSLVSRRGGSRLFGVGPSVSTAPLLQDTVGLL
Ga0307507_1000029026	F032886	GGA	MIIESEYLLIISNKDEKKANWEHLNLNNVTEAETKTITKQGLVTGIITPLDTISIAL
Ga0307507_1000029031	F065308	AGG	MEEDKRKDFYLIGIETTLSSVVVAPLRSPLGTSFFSNSSLLILPNLISFNTPAPFL
Ga0307507_1000029032	F038927	N/A	MKEIIANRLIKALPKQRFQNFVNLVRIVDIKERLDKEKQLKDLREKVRARRKDLDKIMV
Ga0307507_100002905	F041673	N/A	MAIKSLSRLVTFFLGMPYRPTSFLAVYEALLAGLSAGVCFCIGVAAGVMGRTWLVRVLLVVAAVRKVDV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000290

Overview

Ecosystem & Geography

Associated Families

Sequences