Basic Information | |
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Taxon OID | 3300033179 Open in IMG/M |
Scaffold ID | Ga0307507_10000493 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 83402 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 44.5508 | Long. (o) | -123.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013992 | Metagenome | 266 | Y |
F014479 | Metagenome / Metatranscriptome | 262 | Y |
F024756 | Metagenome | 204 | Y |
F027375 | Metagenome | 194 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307507_1000049314 | F013992 | GGA | MAVVIVLYIAVNIHNYSRLVVLVTNNFAGLILFGVGRRDLGISFGNKLGL |
Ga0307507_1000049315 | F027375 | N/A | MVPLLDIIPLSILNKSYYSKNRSTSSAAMIIIIIAKYPKNFIYLLIITRIALATFPILVLVGGKPIIKSIINSNIGSCGIGSTNNLL |
Ga0307507_1000049316 | F024756 | GGA | MPIYSIAYCIMVGEFTGTNSLKYLVLYLGSIIAAGKMEISNLYKPFLDLLL |
Ga0307507_1000049320 | F014479 | GAGG | LFSGSVASVVEGVRVFLSGDRRCARVFELLVRLGIRACSAVLPRGLYCRNLSLLEGPSCLNAMAFHEVFMEFPFKLSRDFKGGW |
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