NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000811

Scaffold Ga0307507_10000811


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000811 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69081
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050242Metagenome145Y
F064533Metagenome128Y
F078226Metagenome116Y
F088008Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000081114F088008GAGVLLHLIIKGLFSCNIIALNNLLIKIALFTIYNRANNLAFMLNIITIPCLFAF
Ga0307507_100008112F078226N/AVLDIDTDKNTNNDNSKEELEDPNGYYLILFGTLTIDKATSISVELANKAYTYLLTATSMEPTTETDPFNYNIITATLRYTSIVFMGIIIDTNTLKKSIAGYR
Ga0307507_1000081122F050242GGAMRLYVPASTAEDIGHFSLGSREVVYINFKLVLQLNLLIVKYRVSSVCKQ
Ga0307507_1000081124F064533N/AMGGPIRPLYPRIGIGLGSSLKGAFKKLASFIAHYMSIKAKAFAPESAKVEVKT
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