Scaffold Ga0307507_10001506

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307507_10001506

Scaffold Ga0307507_10001506

Overview

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10001506 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	52004
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (69.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002555	Metagenome	548	Y
F037003	Metagenome	168	Y
F078226	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000150615	F002555	N/A	MDITPLVDDLEILGIFKDKDKEKGDSVTDSLSTILQLLREESEEAS
Ga0307507_1000150622	F078226	N/A	VLDTDTDKNTNNNNSEEELEDPNSYYLILFRTLTIDKATFISVELANKAYTYLLTITSTEPTTETDPFNYNIITAALRYTSIVFIGIIINTNALKKSIAGYKQF
Ga0307507_100015063	F037003	AGG	MVEGETKEYATKDKTTEETVEVKRNHLSVLVIYHSRTTPSTERACKDIL

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