Basic Information | |
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Taxon OID | 3300033180 Open in IMG/M |
Scaffold ID | Ga0307510_10000002 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 801565 |
Total Scaffold Genes | 672 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 482 (71.73%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 45.654 | Long. (o) | -122.839 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002655 | Metagenome / Metatranscriptome | 539 | Y |
F007865 | Metagenome / Metatranscriptome | 343 | Y |
F060082 | Metagenome | 133 | Y |
F079690 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307510_10000002255 | F060082 | GGAGG | MELASLRASKARYTLVLSLLSGLSFFQHASFATAAVDADDALGLCQVETIPKDIRDTLERRFYGWKVQDSSNLLPRVRQRWATIAPLACPGIATGHFEESRSVAYALLLVPVDRSANGYKFVVFSAPSGQSFYGFKMLDQAPLNASSFFIHSVAIERVFDSAMKKQFRPKANDGVVLFYADEKIPTQNVFYWKGDSYDHAQVDYN |
Ga0307510_10000002281 | F079690 | N/A | MAEDPSARRARYFLYLLGGVFVALGFALDRVPAMAAVTPDLAGRVSAGIGALILAVGRFGSDRLVRRCEMLLTGWF |
Ga0307510_10000002478 | F007865 | GGA | MTTADRASIWIETQYCASVAAALQARAEYFELLEDAMTSPARLVRAFGAWRKHVTQTEVLGGLVGTA |
Ga0307510_1000000273 | F002655 | GGAG | MKIENLSKDLDTAAMTEVTGGTALTGQVVPTNVQSNALEQAFNIASNGPVAIANDGNQSNESDQDSFVPVGSIFLSPALSKLIG |
Ga0307510_1000000276 | F002655 | GGAG | MKIENLSKDLDTEAMTEVTGGTALTGQVVPTNVQSNELLQSFNVASHGPVAIGNSADQSNYSSQDSIVPVGSLFVGSDFFRRES |
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