Scaffold Ga0307510

Basic Information
Taxon OID	3300033180 Open in IMG/M
Scaffold ID	Ga0307510_10000370 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42559
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (61.19%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

42559

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (61.19%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.654	Long. (^o)	-122.839	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

45.654

Long. (^o)

-122.839

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011464	Metagenome	290	Y
F011985	Metagenome	284	Y
F016489	Metagenome	246	Y
F029295	Metagenome	188	Y
F055313	Metagenome	138	Y
F061393	Metagenome	131	Y
F075486	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_1000037014	F029295	N/A	MRIILSSVPKVKMVEVANPELGSLWWTEDMGVENRKGCLRSQGFLYCLVDFQSLLVDPKRGDPWS
Ga0307510_1000037015	F016489	N/A	MSRDAWKTSWIFQVGGNLILYATLDIWETTSKGPYLLGDNLGVMLLGSHRFVPSNQTLDLTGNGECCGHSLIQDSCTLRCASWAAFLASSIAESHCSRDGISVFLVG
Ga0307510_1000037016	F075486	GAGG	VPVVLLSATEYMKVLFKGLVSSFAGSICLRVIGCADVLADIQDVT
Ga0307510_1000037026	F055313	N/A	VVVLLIVNGVLVRVAGGREARWGSKEVLEGGDIDRRIEYRERSRSG
Ga0307510_1000037027	F061393	GAGG	VREPKGKEVRKDKLNRVQEGGLDITKGEVGGPWVLAYFGTDVDWGKGAVRVDVDGVVGVSVEWGDEVWGCSGVKVLGPGDMVEELAIDEFL
Ga0307510_1000037028	F011985	N/A	VANFHEEILRQTYSRIANLQEQVQLTHWSEHHLVPQDLLDILPFGRLFSTQCFYHYIDYQLIDILNTARRCTVYWQLSGAHNFDQSPATQISLFYNKTFLWHYFVLSHRPEIITQIQAGHQIRFLSRFYMSETKVEVEFNEIRLQTNPSREFTSTNLYQFIYSDEQILTYQWNNRAWTTELLAPHTSLIDPPSHFTLPITQPNTQGRDTEYLEHFQRILLEPDLLMLNLSYHNSVDSSLPPTLVGSPQSSPPSTPESVYWCAQEITFSNDNLDLCFCGINLCRCNSRYPGTPPTPLGIHLWDP
Ga0307510_100003706	F011464	N/A	MLINGLDTHPKRIWSGDIVDNQFLDRSCVIFPGSRGRRFPGSRANKSCDVQVMEGSHDESRVGSCDIFPQSHDAEVTGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307510_10000370

Overview

Ecosystem & Geography

Associated Families

Sequences