NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307510_10004249

Scaffold Ga0307510_10004249


Overview

Basic Information
Taxon OID3300033180 Open in IMG/M
Scaffold IDGa0307510_10004249 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16832
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (67.86%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.654Long. (o)-122.839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016489Metagenome246Y
F016903Metagenome243Y
F029295Metagenome188Y
F044236Metagenome154Y
F059500Metagenome133Y
F075486Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0307510_1000424910F059500AGGGGGMSVDFSHLASSAAFDVLSYEDFHSGPPVVGCNELEGFGNSGMSSGFVVVKKGCYSPPKVIVCHDNKCRSVVPVSAIE
Ga0307510_1000424911F044236N/AMKTDAFEQSVSVIVRMVSYPPDRGSLVMKSMATVLKGQAFSVGVIGNIGG
Ga0307510_1000424912F075486GAGMPVILLSATEYTKVLFKGLVGLFAGSVCLRVISCADVLADV
Ga0307510_1000424913F016489AGTAGGVWKTSWIFQVGGNLILYATLDIWETTSKGPYLLGDNLGVMLLGSRRFVPSNQTLDLTGNGEWRGRSLIQDSCALRCASWAAFLALSMAESCCSRDGMSVFLVG
Ga0307510_1000424914F029295GGAMIPSSVPKVKMVEVANPELGSSWWTEDMGVGNREGRLRFQGFLYCLVDFQSPLVGPKHGDPRS
Ga0307510_1000424919F016903N/AMVMMRPGRSPSQNTPVTSAASTHSSFGLGDLYRTPVQTIIEVEDEPMEEGETSDSSMEEGQIADTRQSTPDSMDIGIPCVPSDWLQPSSP
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Institute for Fundamental Biomedical Research
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