NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307510_10025849

Scaffold Ga0307510_10025849


Overview

Basic Information
Taxon OID3300033180 Open in IMG/M
Scaffold IDGa0307510_10025849 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6764
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.654Long. (o)-122.839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004021Metagenome456Y

Sequences

Protein IDFamilyRBSSequence
Ga0307510_100258491F004021GAGGMHQEEPSSASKIVKIVLQQTHGLLLSNCYCVVFELLLSDTYSEF
Ga0307510_100258492F004021GAGGMHQEEPSSASKIVKIAHQQTHGLLLSNSYCLVFELLLSDLYSEF
Ga0307510_100258493F004021GAGGMIQEEPSFASKIVKIAHQRTLRLLLANCYCLVFELSDLYSEF
Ga0307510_100258494F004021GAGGMIQEEPSFASKIVKIAHQQTLVLLLANCYCLVFELSDLYS
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