NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307510_10079974

Scaffold Ga0307510_10079974


Overview

Basic Information
Taxon OID3300033180 Open in IMG/M
Scaffold IDGa0307510_10079974 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3181
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.654Long. (o)-122.839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028665Metagenome190Y
F028977Metagenome189Y
F029295Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0307510_100799742F029295AGGMVEVANPELGSSWWIADMIVGDKEGRLRSQGFLYCLVDLQSPLVDPMHGDPWS
Ga0307510_100799743F028665GAGMSLIHSSRFFLSDVEEVIWGDKSSVGVGFGLIVFDFFCGSEGVWVGDVEWNVFRFLGSAATVASSANGDNVEWCCGSGLVLRGMGCEWESLVVDVGPEDRVIVVDWDHDGFVVDVSGVKGFSWSPSSPVVCDVEVSTSDKRSEEVEIIVVGMHANENNSVVGTKGEDGRGGES
Ga0307510_100799744F028977GAGVEVVEVEGGSAVFLSEDSGDGNVFESVIEVGPFVIESDHVFDTFLTLLLERC
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