NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326728_10000014

Scaffold Ga0326728_10000014


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000014 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)741953
Total Scaffold Genes607 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)500 (82.37%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Associated Families18

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000313Metagenome / Metatranscriptome1323Y
F000442Metagenome / Metatranscriptome1132Y
F001463Metagenome / Metatranscriptome690Y
F004161Metagenome / Metatranscriptome450Y
F006297Metagenome / Metatranscriptome376Y
F014658Metagenome / Metatranscriptome261Y
F016424Metagenome / Metatranscriptome247Y
F025094Metagenome / Metatranscriptome203Y
F038436Metagenome / Metatranscriptome166Y
F055640Metagenome138Y
F060538Metagenome / Metatranscriptome132Y
F061244Metagenome / Metatranscriptome132Y
F088988Metagenome109Y
F089732Metagenome / Metatranscriptome108Y
F089733Metagenome / Metatranscriptome108Y
F091200Metagenome / Metatranscriptome107Y
F093119Metagenome106Y
F101990Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000014103F089732N/AMLELLNVRNVEWALTTATEVVLLVFLVRRNLFRSYFVFSSYILIAVLQSIGMAATYAVWGFESHNAWVIFWLGQLVVEVARFAAIAELSRQVLSPFSGVWALARRILLAIAAIVLVYAALQSKLRWQYWPFHLDRGMGLAGAAVIIALLLFARYYGLPMSHLNRSLCIGFCLYSCFSVINDSLLENWLYGYANFWSFLGVLTFLASLLIWIDAARVSSVTVPARKLAVVSKEEYARLSSTLNARLRQLNERLDHVPHSGDHHS
Ga0326728_10000014104F089733GGGGGMSLTIILFILLAVLLIAALLWAARPMERPALSPDAVLTALSEEHHYSRLPKILQVLQPEDTAFLGPRGFTPLRNQIRSERKRIALLYLDELQREYEMLLEASRMVASMAPELIALDEAERFKLNLRFAVGRRYLRWKLRLGLQPQGSFGFLSEMSSRIALRLEVATNHIGERAALSSDYSSILDEGGDGPQ
Ga0326728_10000014116F025094GAGGMKKFRLLLLTMMMVAAVCPAMARAWKTARIVESSETDVSGELRGKRNIVHYTIETEEMVYFADYTYKPDQKNNSHPPDIAVNIVTKVAIEGRHVYILDANGKEVKLHIVKKARQK
Ga0326728_10000014141F000313N/AMAKITQQWLLFKFIAGEFTPLSKPFKTKLQAEKARLKYPERQRKTIALGVIRLKK
Ga0326728_10000014189F101990AGCAGGMSASTIHAEALLGATFPAGIDTHWETENREMWNEQERTSEERELVYEISWISELGFWRRFLRSQRKVRT
Ga0326728_10000014196F038436AGGAGMAALLTTISPDNPSQAIKTLLAVIVEHAGGEFVGIQDALPEYRLPAYVLFNHPKHRSTLAIRLDENFSTEAILKRLADCDKKFSGHTSSR
Ga0326728_10000014206F016424GAGGVAKQASKLPRKSVRDEKSEFGKDKRRRHHHYLVTVNYADGETFGRVYTDKDKATRFAERQRRSPVVKSARVSQVS
Ga0326728_10000014207F001463GGGGGMLNIHKLPPIVEDLRSHAPEQLAELRLLLSAGITGRPDARRPGFYELDGNDSVYYVFRYPTGHKVLLIAAWDRQSDPAAEMAAYSCPAA
Ga0326728_10000014319F091200GGAMKTAPTLNARMELRKRIRASRMADTLAGMCADLCMQQVEPDEALQRIQEKALERLVSLLDTRIVADAEAMDECLELVAEESGRIACEALEKGMMRLREGLALLESMEDEEETEEFAGRFAGGSVN
Ga0326728_1000001435F055640AGGTGGMPKVKTKKIGLEIRADLYGELSKLARENGQSRRFLLEKAVEHYLYQVVPSQAAIRPEVMKQFRRSVDKNRKLYELLAK
Ga0326728_10000014442F093119AGGMGPDRIRSAGVTAAATLAVLGSLLAFFIWGASILPLLNLQADAAGKHLYEVRPLTFALVALVPPLLVALGLGTGIGLFQLRSWSRKAALLWASIALAFCLSMIALRPFETFAIPEHFVSDAESLRQLLAISVVVLLLPVSIWWLFFFRLRSVVAQFDGPPTPSSR
Ga0326728_10000014446F014658GGAGGMSTETRIAMEHSTPMPPRSESGVSVRYETKVFSHWDRQALAEVTNAFTYEIAWIPERQCWRSFLCSVSKLT
Ga0326728_10000014454F004161AGGTGGMTQTRCDVLCCVEHERLEFELLEVRTRGRYLTRLRAISREEQAEWDRREQRALASLVDHDLEHGCSR
Ga0326728_10000014552F000442GGGGGMLFATVSRGKNQGIRLLPHRFKDNRYHVQLGKEGPYIPVSDDREIPSYLANGYSLLMSNKEEGRTPSLVRPESIHGWSTNFKDLFFPAL
Ga0326728_10000014560F061244GGAGMWQGIQPTPGLAVGGGGTEIVKAKDSLRKWIWWFLGGIAALQLYFVRELLAAFALFALGFIAIGLCVATFYFLLKGWAAGVGWLADSQNAWILATRRAVATVEDWGRRPIRRPDSEPAH
Ga0326728_10000014580F088988GGAGGMRAARWFLVFLSMLCLGAAQEQTYIARYLTDFPGPQVYKDPTSGTLLYIESDGRHVAAISCDGKLLWNRDPFKDAHLPFYRTEKPQIVYIGPASKFHHPAGEKPEKFVEISFNNSQFGLMRIGNGEFLFSGQD
Ga0326728_100000148F006297N/AMIPPTNNLASPPEPSTGRSVESAESWLGRNRSTKRRLWERLNPRHRKELRMLAEALALQQNHARLPDPVRARLDAALAELDRLVRRIAAILAEVARRTPPPG
Ga0326728_1000001484F060538GAGGMRISPHGWARVAAALAVCLSCAFCASAQTEASRKFTWKPLEFAILRFNDAAPYSWNIYHCEKKGLLLVRLWKRYLFIDVEEEEVYDLDPQKVTVAGDNVIWSFSDLPDDPINTPDWSDRNIGRMQRVRFRLGKDGHFLELQLPYDINGRPIY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.