NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000032

Scaffold Ga0326728_10000032


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000032 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)559223
Total Scaffold Genes512 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)325 (63.48%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000359Metagenome / Metatranscriptome1236Y
F001063Metagenome / Metatranscriptome789Y
F001289Metagenome / Metatranscriptome730Y
F003396Metagenome / Metatranscriptome489Y
F014587Metagenome / Metatranscriptome261Y
F015508Metagenome254Y
F016551Metagenome / Metatranscriptome246Y
F045632Metagenome / Metatranscriptome152Y
F095904Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000032130F045632N/AMPKRKLRIVKQGLGVCERCNAQFRDTDIQVQFDAHKCKPIDSSQNALRIVRESTEGK
Ga0326728_10000032264F001063GGAGGMETMLQGLVIVGGLTFSLAASLLIEELIFGRIAQLAFVRRPEKERKTKT
Ga0326728_10000032289F014587GGAMSQDAVKQIERAIGSLTPREIEELYAWLDQHYPPPIDARVQSDLSAGRLDTAIQRALEDEKNGRVQPL
Ga0326728_10000032309F016551GGAMYSMPADVGSAEGEQFMSIEEVSVERFAQLFHHYHQALSDDSGSASHLRTGQAWANVPAGEKNRLITAARLALLEVEVVPTERPSRRYFAKPGQAEWGC
Ga0326728_10000032390F001289GAGGMKNPYDVLRAKEQELIKVRKEMDALRIAAKLLGAEDRKLTSSNEGQPLTRVVEMP
Ga0326728_10000032452F015508AGTAGGMSKTVLAAALCLMAVAAFAQKPSAGATKIDDDFIHRQFGDQFTLIPTLAPAFGDLDGDGIEDAVIAARCKNPMLDQGEHNFRVIDPYNSFFGYGNPAVTTTFSEGDPALRGLVMLIIHGSGPEGWRSAKPKAKYVIVNLPYRAIYVRKFQFKKKNIEALYIEEAGSFGSSSAVFFDGKKFQYVPMGGDME
Ga0326728_10000032459F003396N/AMPKKRKKRRFSAATVVREMARERVGSPKPSQLVPAKTTKAEKHKPTLGKLLSDE
Ga0326728_1000003260F000359AGGAGMSGQVVLYFEDQADALRFALAAGGVMAGETKASSELVQKTARVSRIRLNATNTGKGKSGAPEQAA
Ga0326728_1000003271F095904GGAGMKRKSVLALTFVFASAFALVLLIAPVQAQQSCKAFHAFVQGSLPSSNQFAPTDTWGGPIFVNLGGEFLQGGLSGNDGTEYPHGPVSIFKGGEYKVCLTSAASWGGPNDCSDSLTYDVPRAVVIWPAGKSLGSYKATAKVVKGTGRFASASGQLEIEGPFILWTDSNSPFGVSGRWNSEFKGGVCGI
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