NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000060

Scaffold Ga0326728_10000060


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000060 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)427879
Total Scaffold Genes399 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)262 (65.66%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000275Metagenome / Metatranscriptome1391Y
F007078Metagenome / Metatranscriptome358Y
F034627Metagenome / Metatranscriptome174Y
F040734Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000006010F007078GAGVHDSTTRLQRTARERADDEARRIPWQRLFEARNQYIDWQEFSLWVRSILEVENRIPDWLVEILDERVPGFLESEKQLTLQAAKGRPIPLRLEDWIDDHIFGFAKQEGWFNAITYYAIRDPRYQRAEVCWSECTEKWKKAKRNQYPSFEEWKGMAAQCDETAHLTATERQALASTKLVQPDRLCEAVARYIDWQAFAYWARPALERESRLPAEVASILECRCPGFLNASIKARQRESGGDSQALQQLMLWIAEHSFQDAQTEGWFDAILVHVRSHPRAIRTMEYADRCDDVWSSEPPDPYPCFEDWRRDADLYVDLGD
Ga0326728_1000006014F034627AGGMNHAIKKSAVEDCVRIKDLGYASSHHIRMYGQQFEIVSDPIPDGNGVSVQVTSATEPTKRTLRLPTSILVGFKDFFPKSLES
Ga0326728_100000602F000275N/AMNEKRKTSARRRRTHAEIQQLVAEFLSGGMRRTEFCRSRGLSFGTLNRHLKKQRWKRKSRRASLASRLVPVELAAGKSPRQYEPSCGLAVVLSSGRRIEVNPDFDTNTFERLVSALERA
Ga0326728_10000060356F040734N/AMRALAIFVCAFCLAASLLAQNWNRVHRSDEAKWAKTTGLDPAIIHKLWRDASHTPDEKDDDSRIANIDLDGLAERHDLLLVTYAGEKNCLTLTVFRQYSEFKFSKVWSVDQLPDKTGFCDTPFGSAAAEAVNGTVAVRVPKSTTDGATNYTLYVYEWNGMTYRLTGQKEIQAK
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