NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000092

Scaffold Ga0326728_10000092


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000092 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)356299
Total Scaffold Genes317 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)252 (79.50%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001589Metagenome / Metatranscriptome667Y
F002012Metagenome / Metatranscriptome604Y
F009817Metagenome / Metatranscriptome312Y
F011955Metagenome / Metatranscriptome285Y
F013445Metagenome / Metatranscriptome271Y
F022967Metagenome / Metatranscriptome212Y
F025076Metagenome / Metatranscriptome203Y
F025722Metagenome / Metatranscriptome200Y
F026629Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000092152F026629N/AMKILLIHSEDDPEKGPWANLSWDQIVDLGLGGVNSYARWTRRFQCPVTPLGSLWNGFDDFRRVRHLLALGSGRMLDEYGLDWWEIMSILLHGEVEALMLMQRFAQTVSAGDEVHVSRPGLHASLLQSLRSKQVRVFSSRGSRESGLAHYARVSRKLSARQMVDIFWDKYDAGYQLRGRFARKRRSFRQPAVLLPTAYVNVSRTGIAYANTFPEENFLLVTTRRSGWVQNLPRNVKAAWLSFYAEVRDRTPENIEMERRWRCLLTELTGTTEFDILNRVGYLQNFTRWIRRGLEVRDAWRNVLESEPVEAVLCSDDSNPYTRMPMLLAQARGLPNIACHHGALDGRYVFKRSYGDVVWAKGRMEEDYLVRKCGVPADRVEIAAPVPPANWNEFRVGKRDGSQPHLLFLSEVFEAGGGRAEEVYRDVVPALANVALANGRELIVKLHPGESRRERTDMLARVLSAEQKSVMRIVSGPLMEDLLDGAWFGITILSTVALECAIRGVPCFLCKWLESWPYGYVEQFIRFGVSIGLDRPSDIEKIPEYLRANPVSRDVRKNCWQPAAPGRLRELLAAARPPYTTVTR
Ga0326728_10000092167F011955AGGAMTAGTPILRATRADLFTLSEKDLAELARFVAAQSGRATDPVEGHLRWFLLENPARQPQDPLGFGLRSADRLVGCILCSPQDFCCESRKIRLMGSSSFYVDERYRGQGGRIFLQYSRLAKQWPLFGTSANAEAAALWKAAGGSPIPHSDAEFFGVLHWPPVAEEFAHRRHPSALLSRVAGTSVSKLLALFRPLKIEGSISNALELLTSAEQVNDVVVQDSCAKLTAMRDSAYIRWRYFSGQDASVAAFAFRGRKPDRQVLVTVNQRIRGYRYQIKTLNLLDVYPEVPADEYLRIVGALIDRYRKTVDTIVLRSQNLIQQKLFCERGFQRRVFDSPTGWFLDKAGLLPTHDWYPVPADGDGL
Ga0326728_10000092185F001589GAGMRKLFILALSILALLSLPSCSPRDFLTRRLAADLIERSETFRAPQRFLLRTGVISNDDYLSPESLALQHRGWISGSKTPCPLSLVPPPCWEVILTPSGVDTFHTLVAPGDAEKPTFSIPAARRELVAITGIAKQANLADVEFIWRWFPLNEVGAVVFPSDLRYRSTASFRCYDDGWRVVVRASSHHGQPLDEALKNAEPAQ
Ga0326728_10000092200F022967AGGAGMVEAAGVEPASENVTGQETTCLFAFMPQALPWDVRGPRSERTRNASH
Ga0326728_10000092207F002012GGAGMALPLTSKVVAGAARTKVAVSMYNLAHAPLLAALVLLQRHSSRRNDVYNILWAVVFGFATINILSLAARRFEPNRRGLTFGELMAVLIVLLSIFLLGWELLSVFRIFPIKIQR
Ga0326728_1000009257F025076AGGAGGMNRSGRLHLVGRITYYVGWIALVCGGLVHLNIARALFAAMSLTKRNLFEVSIACFVICVASEVRALVSTEN
Ga0326728_1000009263F013445N/AMTTKDERIGFRVSSEVKGALLQIAKKEGRSLAQICELLLKGGIHEYEREGSRYFQRLLARPKEKDR
Ga0326728_1000009267F025722GAGMFLTGAGSVLGGAEMLRPVADALQPFRFVSLAADDHRRLGALIWERSSQNKFEEVWIEKLRAASRLQNENRSGRFRLAGAAGLLMFGLATTAYLLAPGLLK
Ga0326728_1000009281F009817GGAMGTNWLSAILKPAAAVLLAIFSVCHPGFAQQQVSYALLQPEPAGPAPMVQSFQPVAPSHAYSEHRFWDRDNSILFATNAAFSAADFVVTRDNLRNGGQELNPITRVFTGSTPALAMNFAGETAGVVGLSYFFHKTGHHRLERAVSLLNIGGSAAAVSFGLAHR
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