NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000099

Scaffold Ga0326728_10000099


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000099 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)349865
Total Scaffold Genes277 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)185 (66.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003313Metagenome / Metatranscriptome494Y
F011011Metagenome / Metatranscriptome296Y
F091900Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000099103F003313N/ALDRTLRIYAWFLLIVTALPAAARLAKPRELARITMLRYQDPRRRKRSRITGFIYLGLALFGIPFLWHAEAHQARWLIILLILVMLSAVESLFNSRAFDEGSLARQNRLFGGVYASIAIATALLLFTR
Ga0326728_1000009976F091900AGGAGMRRFLLIAMLVVGVTAMVAQTSMTQGMQNAPARKSPLAGYAGAWIGTFNGKAWFTIHLAQQGTAMTGTLQRQNDVKFTDQGDIKSVGEEQLNGAVQSAELNGDGLLLTVKENGTQQTDRYLMRLIGADSAEVKMVAMSMPPGMPKPKPWKLSRVGPNAVTPVR
Ga0326728_1000009978F011011N/AMTSPILRLLGALAGLGSAILCWFLGGAVGGPLRQGTLLALDGAHYALLAFLLVPALILAVVALFWVPPRLSGGGPLPEGRMWRLALVLFFLAALALGMVR
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