NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000106

Scaffold Ga0326728_10000106


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000106 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)338050
Total Scaffold Genes308 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)209 (67.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000218Metagenome / Metatranscriptome1552Y
F032295Metagenome / Metatranscriptome180Y
F040743Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000106138F032295N/AMLGPAGALAFMYALAVEGNHWMFDLDFSPPQGLTLPLWRSLLINLADRFAPERLPPLELTSKPVDVGMLEGDRLELPWYRTVFTNISDVISPELLPPLQLESRPVDVGELLGDELSHGWWNSLLQNLRDRLSPERPAPLQLTSHPIAAFGAESSLQILDWSSLITGPMVFRADPPPQAPSMSGSFEQAPPVAVPEAVPVDPVLLAARLQLVRDIGRSRFRRKIWIILAAAEAVFFLVAIFKMQ
Ga0326728_1000010627F040743AGGAGMPGFDRDQAAIDNTVENRRLGSILLTLGWILLWMDAVLGVFFFISLRNGSMFWPIWLAIEGVLGLALVIMGTRYRRAVGATRLGRRELEHTLAQQRQDDAEDQHVA
Ga0326728_10000106292F000218AGGAGMESITSLGPFLVPTTAIIVGGVIAVVVLILRHQERIAKIERGIDPDGANKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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