NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000109

Scaffold Ga0326728_10000109


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000109 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)329138
Total Scaffold Genes322 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)223 (69.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011598Metagenome / Metatranscriptome289Y
F022165Metagenome / Metatranscriptome215Y
F082104Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000109118F022165GGAGMQSEKEQVLCPLCHGHGRDKKELLVVRWRSREFEQELQKIADEAAFGSSSGLDVPFQREEPVYSNESD
Ga0326728_10000109177F011598AGGAMPGTLHIFRLKDNPPQYQVNYNLGANSWVQVFDPTHLDEFLRHSAGLPAAEADAMLNELRSDGHTTEANVDIAEMHLGEMGFAESPSDE
Ga0326728_100001094F082104AGGAGGMELRLTDKEHDVLLESLQEQHKHLLHDIAKADHHEFREALRDRCTALEGVLEKLRVPVHSAA
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