NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000188

Scaffold Ga0326728_10000188


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000188 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)255129
Total Scaffold Genes226 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)165 (73.01%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000775Metagenome / Metatranscriptome896Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000188121F000188GGAGGMSVKAETAFDVCWEVYRGAREILETKRGMGALDWQQDAKYLWRPDLRPKLKDWVADFALAGQAGLEGPERASRMVMFRLYYLGLAPYEIARHFLGLSERSWTNWSEEIRRRCGEEMLRRGLFPPRSYFNGEK
Ga0326728_10000188133F000512N/AMIQVIRESHETPESVAERLARVGGLNRYGEANYRVVWGWNRLAWIGGKFEDRDENGKLVREVVELRREPKYAAVNRWHVERWVPPEAYGSPSAWYAQTLESAEGRSVAALGPYPERGEYEHCFTVQGANGEFVQLTPAIVEYVARAIEWSQRMPKAKRRERLYEREARKDREYEAWAYDRLDDGVPALHGQPFVTVG
Ga0326728_10000188144F084509GAGGMPSYSNTLPPSSVGFGESASVIASTDTIYPAPFKSAQVALAPNFSTGKVRCAVEIVWSGAPGSISVQLQTADTDVDAAYNQEGSAITTVSSGNVSRAEFPDAVAHFARIYIATLPNSVTATAKISA
Ga0326728_10000188170F000775AGGCGGMKNLDSVFAAYIIGWGVFFLFYLSIAKRTSDLRAEIERLKNSLPRSS
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