NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000196

Scaffold Ga0326728_10000196


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000196 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)251618
Total Scaffold Genes231 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)198 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035996Metagenome / Metatranscriptome171N
F045216Metagenome / Metatranscriptome153Y
F051353Metagenome / Metatranscriptome144Y
F091144Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000196106F091144GGAGGMEWSRSLGKTARLAGVGLCLLIWAGKAAGQTKEVAGQYVCAEARVAGKTVPCKAAPLSLKSDGRFELQGREGDYLVSGSWVELNGTVLKSRAKIEAGHKIVFRFYNKKGLCEMIYERRVAELGKTQLG
Ga0326728_10000196144F045216N/AMDPDERLVAAVGGAAGYLADAAGLGKETILQFQASVVSACKHCFRCHSSDTPCGITLRRSLDRLEVEVALPATESPPGEKPSWEGIDEVHCESRDHSAILRLTKFVSPNPPAG
Ga0326728_1000019657F035996AGGAGGVAIRVSFHNGNDKSIKVDLRSIRLLVQFSEDSRQELVPLSAEDVADAVLLKENDKDPTARRNPLPIPIGKTRPSRDANWINLRDACQNAAVPTSVVAAHTSVEGLIYFGLRGEVELLQISRLYIPNLVTMGDNQPLSYFDIDLGQNSSN
Ga0326728_1000019666F051353N/AMAPLLHRIRDFRFPPRVSFFLAVAGLLLFVGCEQALKVDDPQLKPIQDMLEAKLPPGTTEGAVNQFLAMRGYPTEAADKPGTIVAIIRHIDTERLQPVTARVTFYFDANGKLNTVEIVRTANEPIPAGEPAPTNQPDPAQ
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