Basic Information | |
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Taxon OID | 3300033402 Open in IMG/M |
Scaffold ID | Ga0326728_10000333 Open in IMG/M |
Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 190902 |
Total Scaffold Genes | 163 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 146 (89.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006132 | Metagenome / Metatranscriptome | 380 | Y |
F013290 | Metagenome / Metatranscriptome | 272 | Y |
F038950 | Metagenome | 164 | Y |
F085268 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326728_10000333151 | F085268 | AGGAGG | MSARNGDKARFGRLRKHRILLRKRLREIRDAVESKTTTTAIAASEYDGTSSRALKPMG |
Ga0326728_1000033316 | F038950 | AGGAG | MTKPEPPATAVPPALRHENYLRACKAGLVMREADFRRRYHTLKHGLGRGASSLEESMAALGEDPAEFNSMLRLIERAFVPKNLPEYEVVLRLAGSIWRRLRLYKAAARWEEDALRQALSSGPDVVSLTVEETCLRACGLMTLLLDEPRVVRSRFQLLAEVERQIRALLKIRSGGKAKFRFISRQSRKAERELEEEERLWRVMDRIDQGGPEVEAILEKFCAQKERRRA |
Ga0326728_1000033371 | F013290 | AGGAG | MKVELKPVIDALKHDANRLEHHARKLRATSPNFEAEAEDVDDRVESIRKQIEILEQWE |
Ga0326728_1000033387 | F006132 | GGAGG | MKKWLCSIAGLSLALAGSLAAQAQTPAVPPPNILQIQTDNIKPYEDAPYDNLASEYPALSQQLKDPTHVLGMEALTGTPRAIYLSGFDSYEALQKNEEWLLGEAATDAKFDALDARQALHVSEVHHTIWHYRPDLSNNVAEADIPHSHYWEVVIFHMRSGHHEQFEELTKLYRDANLKIGQNIPWASYEGLTGVTAAYLVLVPMTSLKDADAGLAHAKDFGAALGDEGRAQMSKLSEESVTSVEDNIWMVIPEWSYVEKSWIDADPQFWAPEPAAKPARKPAAGATPAPKAPPAQ |
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