NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000333

Scaffold Ga0326728_10000333


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000333 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)190902
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)146 (89.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006132Metagenome / Metatranscriptome380Y
F013290Metagenome / Metatranscriptome272Y
F038950Metagenome164Y
F085268Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000333151F085268AGGAGGMSARNGDKARFGRLRKHRILLRKRLREIRDAVESKTTTTAIAASEYDGTSSRALKPMG
Ga0326728_1000033316F038950AGGAGMTKPEPPATAVPPALRHENYLRACKAGLVMREADFRRRYHTLKHGLGRGASSLEESMAALGEDPAEFNSMLRLIERAFVPKNLPEYEVVLRLAGSIWRRLRLYKAAARWEEDALRQALSSGPDVVSLTVEETCLRACGLMTLLLDEPRVVRSRFQLLAEVERQIRALLKIRSGGKAKFRFISRQSRKAERELEEEERLWRVMDRIDQGGPEVEAILEKFCAQKERRRA
Ga0326728_1000033371F013290AGGAGMKVELKPVIDALKHDANRLEHHARKLRATSPNFEAEAEDVDDRVESIRKQIEILEQWE
Ga0326728_1000033387F006132GGAGGMKKWLCSIAGLSLALAGSLAAQAQTPAVPPPNILQIQTDNIKPYEDAPYDNLASEYPALSQQLKDPTHVLGMEALTGTPRAIYLSGFDSYEALQKNEEWLLGEAATDAKFDALDARQALHVSEVHHTIWHYRPDLSNNVAEADIPHSHYWEVVIFHMRSGHHEQFEELTKLYRDANLKIGQNIPWASYEGLTGVTAAYLVLVPMTSLKDADAGLAHAKDFGAALGDEGRAQMSKLSEESVTSVEDNIWMVIPEWSYVEKSWIDADPQFWAPEPAAKPARKPAAGATPAPKAPPAQ

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