NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000576

Scaffold Ga0326728_10000576


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000576 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)142551
Total Scaffold Genes128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)112 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000552Metagenome / Metatranscriptome1033Y
F028026Metagenome / Metatranscriptome193Y
F084589Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000576128F000552GAGGLEAKRRKLVWVEKQNFQGWACSECAWAFKPLGPLVGESIEEMKTHYEQLRDKEFASHVC
Ga0326728_1000057630F084589GGAGGMFTAMLFAIAIVALMQFALYYWRAVISGVASRPISSSVLEAVALDESDLRGADFERLASLFTLTPELKTGRGGLGPVRAYYKIVGKVATLFGRISPALMNWSEQERALCARYAAVQIERRLEANFAQAASIRSC
Ga0326728_1000057666F028026AGGAMKNKSLLANLVLFGALAVAVPVFAKPMSANLPLTHNVKVGQTELKAGDYRFLIDGNHMTILLGKKQVAEADGRWEDRDSKAPYNSIVSNAEGKLIELRFEGKKNVFVLPQ
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