NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10001211

Scaffold Ga0326728_10001211


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10001211 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92458
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (84.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019267Metagenome / Metatranscriptome230Y
F022798Metagenome212Y
F023263Metagenome210Y
F040975Metagenome160Y
F048047Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000121111F048047AGGAGMSGNGIAKASDFRAAVERSNVEHVVLPASGLAVLLCRPPVFAALAMGRAGTQLQAKITDAKPEEIKTEDIEAFTQWLSETLARLFVQPRFAAAPQGDEIGLADILIEDLKFIFRWLRGEVFSAEGGTGVPPVTHGQDGHATLATEDLGRFPPRQRAASVPGGSGEAQPVPSERTPGTHRDAGLSARLHGG
Ga0326728_1000121114F040975GGAMILGNQTWQSGLTSPQKQPLYILQIPQFGIVLASFTQSQIQSLTQTGFGVMTWGIGGWGT
Ga0326728_100012114F023263AGGAGMLGTEGLTAAKFDTNIRALRGTVMGLPVTNLSTESDFYVGLPSGANVQPVGVLAQDVVEPGYPLTAELWLDPNTGNPINGTVPPSPFVSQGRAWGLITAASEAEVIAADTTIQADDLVYIADAYGRVTSIRNGSVGTMYYCVGRAKYPSTAINQRLRITVTLQQVKL
Ga0326728_100012117F019267GGAGGMAASATYTTLYTFRLDRRQLVRRIRVDITGLASGANTVAHGIAAPNNQSVGQTPKDELVLLTSSVAVHRTQSADATNLYYTVDSGSGTTISVYVTV
Ga0326728_100012118F022798AGGAMSYTTITQVAGMFPTFTRNGAKGPSDTLIQNFIDDVAGEIDAILQRRFQEAFSTQGFTAWQGAFSTDQLNLLEKINRYGACAQLAEVFETSGIAAAARVAKGFEDGFRELCNKLNARDADGKSPAQGGDYDYLFDPLAKVETPRPQLGGVAGGDRYPSETSGENSTNVFKKWDRREF
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