Scaffold Ga0326728_10001242

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326728_10001242

Scaffold Ga0326728_10001242

Overview

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10001242 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	91369
Total Scaffold Genes	81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (69.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005732	Metagenome / Metatranscriptome	391	Y
F088562	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000124226	F088562	AGGAG	VNEQPQHLKLVVAYDRNRNEYSLPAHNLTAVEASDYLNTWSHNLRDGCSLIVLDQIKRHRTEEAKNCRACRETVARSAHLEPQPKFVRSSE
Ga0326728_1000124268	F005732	AGCAG	MAKFSPATRKGDCEEIANPSTAYGRRRRNWIDAHGSVPAGQVVDASCGNRHCIALQHSYLRPRVEQPGTYRKLAERVHKLKIGQHFDVAGIGTDDRSRNRFRSGLYAAARLDRVSVRGQPDGSVRVTKVGEWASVRT

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