NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10001469

Scaffold Ga0326728_10001469


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10001469 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82915
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (85.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001260Metagenome / Metatranscriptome735Y
F021214Metagenome / Metatranscriptome220Y
F028682Metagenome190Y
F096419Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000146919F021214AGGAGGMAETGQFKGIRGFLWLAVGFLLLAAAIGSAIYIVVHLVNCL
Ga0326728_1000146923F028682AGGAGMRILLKVTSSNEYCDGGCEFALVDLSPELAALALQRIAALRDQKTVDPNIVETYYWAYFAACYFSPYAGLAVDDMEAEGASIPLGDLLHELQIEDKEIVCAPASFQVPPGQVAAVQCEQMIVYEASIAFTAIPKHASFYVHTVEIPVTMLEAALAISPSTTQA
Ga0326728_1000146945F001260AGGAMATWKVIALVNGEIEAVSGPAAQDRPGAHEWMVWQGTAADKAEALQSAEKADPRVDLEWMRIRYERDLEKR
Ga0326728_1000146946F096419AGAAGGMSNNKPERSKIQDEPSRPQQAVQWAMRHPGVLLLSSVAVGIVLAFRLNDDQQPRGERRVETEADIVDGDVPLFI
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