Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10001732 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10001732 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	75774
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (36.05%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

75774

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (36.05%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F042481	Metagenome / Metatranscriptome	158	N
F044275	Metagenome	154	Y
F045503	Metagenome / Metatranscriptome	152	N
F046149	Metagenome	151	Y
F052751	Metagenome	142	N
F061699	Metagenome	131	N
F076810	Metagenome	117	N
F084004	Metagenome	112	N
F098523	Metagenome	103	N
F098576	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100017321	F084004	N/A	GNDSLEFVYNGFITRFAEGNSAWKTEITLGADLNKPPPPPYRLQYHDSLGYYTYRPKHWSELNDYEQFALRNDPRLPDFVREHALSLRNGQWSALAAASKAKPLVPVAGDALSVDSQNAGVLTPEGENRWGYRFEPGDLLNSKPLRLVEVAP
Ga0326728_1000173210	F042481	N/A	MNRPLFAFFSALTLLTFLLERYASWFAPGCPATQVVGLGTLRILFFAFFAIQMLLPFYHWAKDPNFTTDTASGFVLFVSIVSAVLAFFIYNVPLVALNALVRLAQLCTNS
Ga0326728_1000173221	F098576	N/A	VKEARHFVVTHSHRHGVTTGLVIGGKGQKQPTPAEAIKLLQLDYEPEREEFVEVTEVAPVLLTKPRRHRQMTGGQRARLIAQWARRLYDITASWQGPIGMQLAYLFAAMARGSHVALNRRSALVRLLRQEAVPASDPIWRYIRIEE
Ga0326728_1000173222	F045503	GGA	MKVKLPRPAPGNQRVREIQQWLGAYGGSVANAYVVNAGALRELGAERGILEKILWRVPREKPELPLTGEAMMELLAPKRLMREVRKQLKLDTQSHQAHTRAFEQSRQQLIASKVPASAQDREGVIREVESWFKRVLPEMRDTQAILRATELRLEAGRDIHPVLPPLRATTELVEQLNKREPGRVYIDKDGGELLLLKPGEQAVLSEKGLRIENGAPALPAPEMN
Ga0326728_1000173223	F098523	AGG	VPYGVKLKIVDLDRLKGALQEARVAFTERLVPHTNPAMIALVVQRAGYSLSVTPTLYYHGPVVEIRPNGGPRISFRSSKDPAELVAVMDTFVQVRKWTTRLQPKWATRQLALITGSSPGSPVLVYEPCCARLAIIPRPASFNQLHKHSPVKKYKLGASPKLIAADLVQLHHQNTPKRSWESFVEDWNCQHSASFGHQLTLSASYIYAWNGMRFLMDGDDLSMDVWGPVFSVAFPEAIRLLESIQAVLGKIVTGRGNEEGPPREADPV
Ga0326728_100017325	F052751	N/A	MFTRRPSDQSWIKYLLSTGLVTVDQLERMRANQNQMDVGELLVRNAPLFEPGLWLNQALQQDRFHYIPVNALDARELAELQQLQPSLISCCLSEGILPLGFSHQTLYLGLLRYDPEFPELKEILRSIPAELRVCLVPVAPSDYAKLNQSLRGAATP
Ga0326728_1000173270	F061699	GGAGG	MVVSAPKQPRVFLTAHDAAGSVRGKWQEWRAAGVWLSKFHKPGTAFALPFDPDDYLWAGPVTLKLEIPEGRELYYRRGHYRRGVRKYLNQLKRGEKLPPVVLLYHEAWDWTMQDGNHRMEALITHRAPTYEAFLGKPKRRKPIDKF
Ga0326728_1000173277	F076810	GGTGG	MPGTPTPLAITLQRQGISASLRTQPHALMTPGPGNSNPGFSLVLQAAPSGTAWYLDLAIDGKHEKVFANGCGDQSWWYGRNVCRERPELFTNLEVAKRAAEVELGKRLNRPVHIRPHVELYCPCEAPFYDYLESDVEFARARYDAQTDSIRSVPDGRCLLSWPKNDLLHPRFHRPADGAHIPAGCRWQSICPKAHQEFLKTHNQRPGLERAKRWLAWLISEYRKYGLDS
Ga0326728_1000173279	F044275	N/A	MADRFPIRYEIGGNITTAVLDRLIRQLLDVQMTREYGGCDDEESLHKEVERISGTSSLQVCNNDLAPYLTEELDLFLMEHKLPFVKRTDARHEYDSQIEWWRPGMQHLGKWEFTNTEANAIHISLESLKKALEQHKTLRQVVAALERVAPDPGPVILLAPTSKKRGTGRRVRSSNNDTNKTDALQQTKG
Ga0326728_1000173280	F046149	N/A	LAPELADLAPPVSTGRSSPSLPPSASAAWICESCRKDWTGLPRETGLIYGKHKRMSKQILLNQAVLEFHGPDNLPGGITQALEKKLDRADWTELLQPVLQGIPAKIRVVDVSGPGRMGKKPAKTGRSRKKGTFCVEITRIGYGSKTFEISDVTAAEAESIALEQAGNHEFTEANSEYEVLSVREKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10001732

Overview

Ecosystem & Geography

Associated Families

Sequences