NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10003821

Scaffold Ga0326728_10003821


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10003821 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45812
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (70.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F009029Metagenome324Y
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000382117F000451N/AMARFQTIIRSARFVYSPYTATEMQGFAQVLADSIRARIQSGQNIYDQAAAPLKLGLAGQRGYPDYKAARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDETLPGRRLTASQIAAFNNRREAQWGVSPRDRQAVLAAFQARPFVMLKAA
Ga0326728_1000382119F000335N/AMPASLCTAFTELREYAQLQNQYHDGTIQRSQLAQTSRRTFRLSKRLSASVLSALYSFWVSQNAGLTPFAFYDPFDVASGQQIGSNYDPTGNNTQGRVTAVFRGNWAQATDIARTNVQALELVEVS
Ga0326728_1000382131F009029GGCGGMSGLPRPVDLTQVPAVPWAWVDERVYAAIRACSVKVLQNERRLNIGCPFRRINGTTVRYKFGDIMAFLESQPGGGGTAEPSHKPQRGSGQPRKSST
Ga0326728_100038219F010139GAGGMETVFMRSPDGEVKEVEATTEKLTILMASGWHQVPAPVAAQKPVVVAEEEEQHG
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