 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10006694 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30715 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (77.78%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F000781 | Metagenome / Metatranscriptome | 895 | Y |
| F000885 | Metagenome / Metatranscriptome | 849 | Y |
| F007488 | Metagenome / Metatranscriptome | 350 | Y |
| F015120 | Metagenome / Metatranscriptome | 257 | Y |
| F076450 | Metagenome | 118 | N |
| F079694 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_1000669414 | F000739 | GGAG | MNRLHVWLKGIVAAGISGAAGGVMTGLAAVGIDPAHFNLQAGMGATVRIGTAAALINAVIGVAAYLQKSPLPDSK |
| Ga0326728_1000669415 | F000512 | GAG | VSSRVSEASRGIAAEPKGLAAIPRLRPGERRRDSARNDNLQNLVGKIQVVRETHETPDEVTRRLEAAGGRNRFGEPNYRVVWGWNRLAWIGGKFEDRGAHGDLVREIVELRLEPKYPQVNRWHVERWVPPETYGSPREWYANTVETANGASVPALGPYPERGEYEHCFTLQGPKGDFVQLTPTIVEHVARAVEWAKRFPKAKQRGMLYERESREERKYEEWAYTLMDDAAPALHGQPFVTVK |
| Ga0326728_1000669421 | F015120 | N/A | MMTTQSLIRGFFRTRYVGLLEEEVARLRGENRALLNSLLGTAGFPPVEFAEPVKPVELPRLRRRSWQQMQMKKEQEAMRG |
| Ga0326728_1000669425 | F000885 | AGGAGG | MASAKVVFIGEVAQIAGVGAVVAGVVLSLHHWGAAAALIGGFAAFYVGKKLRGA |
| Ga0326728_1000669432 | F076450 | N/A | MRSDSQGRAIQIGRYLNTPLVLNVGVTSASIQLNQNQHYRLWGSVDLFFQFGPTGVTATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGTGVLFISQIDAQGV |
| Ga0326728_1000669433 | F079694 | AGGAG | MPTYQNATPPSALYPGDVGYSWNNEAFPGATTSGSQFALSTPGGYAPETGFAVRWQTIYGSAPSAVNIRLQGAMADVDAEYMDLDTSTNTAGEGRQVTGVQAKFLRIKLYSSTGGSGLTAKILV |
| Ga0326728_100066944 | F007488 | N/A | MTLRIREYDEGDLEALRAIHAAQGFPYEFPDLRNPLFLTKLVLAGDESDPAEGKGIAGAALLRLTAEAYLLLDPKRGTPKERWQWLLELHEAARRQAWQRGLEDVHAWLPPEIATKFGRRLARLGWVRDDEWTPYCKRLGTTFELIKGRET |
| Ga0326728_100066946 | F000781 | GGAG | MLTVAQLAPLKDRDPYLYETLTKIVSAVNATSQNAGVDPATPSPAPAPIASLQVQAANGWFDLSIADPAASRPGLFYFAESDVTPAFSAPRVHFLGAARNLYLQLGNQTLYWRAYSQYIGSQPSAPVSFGSPPIAVVGGGASGPAPLPSSGSGTLPNGLLRGGNGFGTPTGARIVKQTIL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |