NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10011628

Scaffold Ga0326728_10011628


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10011628 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19966
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034796Metagenome173Y
F039909Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1001162825F039909AGGCGGMAHEAGNTFTTIREIFHPIALLAGPQYAARLRIRKVEGRIYLTDYSQWLWSPLSGEEPRILTEWELEELVSPLDVCRTLLLSAQDAMVSLFRQIDSVHPPLTPTWTEPSRRHADEVISCVFHLKRRSNAHGSGGLERE
Ga0326728_100116283F034796N/AMPPILITASVTSSRASPEQGVRQRSGLLLNPHYATPPALRAVATNTMFRVVSCAGPDGKQRVHAEPLIPAPRNSSWKPGGNQLHSDDAAYAEFTGGTDPIPLYDVQAA
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