NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10022079

Scaffold Ga0326728_10022079


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10022079 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11861
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023510Metagenome209N
F024018Metagenome207N
F036061Metagenome170N
F041558Metagenome159N
F064338Metagenome128N
F071899Metagenome121N
F104335Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1002207912F041558AGGAGMPPRKNQSKKATAKAKPAPVKPTAKTEPAAAPEVIAPQAPKFTAGDLVRKALQLRQQHTLNAPVPTTEVPKGPKPMIVEFKVVLSDGTVLHAEGKHADVMVRFSNECQEICQTQGLAAYNGPPMTRYTAQEWAAKNA
Ga0326728_1002207917F024018AGGAGLSAHPTPSLDLAKLLAADNVSTADRIWEVAFEAKMPAELITEEDLKCPDCGVVHDPDIEHARIVSDAITILGGPDAQPSVDRVREHILSQEVGDGLRMTDFILIGVKLLAAAEVV
Ga0326728_1002207918F036061GGAGGVPENWKNPAITQQGIHATETPAGLFSDPPFGHLFAELTDLAAATAAGFRTVLVPPDTPLFCFYCHDTEAPEYRLRRKGGKYVALCHRRGTIEGCWDRDVAPMCEYRDHEGIQCDQVAEWRVAFGKDMLMSTHRCLIHVPPALSDVSEHRVFPI
Ga0326728_1002207921F064338AGGMATLGLIPIPEDLPLFPVPTENVNGLLATSEDLGLTVEEKQELDNYQSALRILGPAAGAVLMCPGNQENVADEDKCPYSSKCPLLRMHKAPADKMCPVERMIVEERFNAWCRELSTDPVLAKESDRVAISDLCWIDLQMQRSLHILSKGDEARLTVTNPKDVHPETFLPISWEKVIHPNVELLVTLQTQRRMILKDWMLTPEQKWKREKAEGKGSGKDIASKQSARADRLRAIKSSNED
Ga0326728_100220793F023510GGAMVKPIDPWPAPGPNSHIFFKVSAVSPNHYGIPPTTFIVEAVNEEAATECVKRAIRMGILLPRGCDGALSPWPTYFQSNALRYLLDGMFVAEEMGTMPTLRFFPDPSIRDEWLRYQLSWRARLVEDLQKWWSAVKARSFFTSWFGR
Ga0326728_100220797F104335GAGGMAFWEVFGTAVTDDNNTVTFRTYVAAEELVDTVNEALDAIFEIENPEIYDEPGTTTNGCFAMGQGLAAVEPPPAVNVHVEVHV
Ga0326728_100220798F071899GAGGMQARVKLTPRIIARLIVGKPVTVNLPAGTSKLSLVMDGKFHEFLRAFSAPEEFEPETSRTEVIGLFDLIFGRH
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