NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10030487

Scaffold Ga0326728_10030487


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10030487 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9155
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015508Metagenome254Y
F023389Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100304877F015508N/AMLIPAFAQSPPASRKIDNEFVQQQFGDQFTLLPEIAPVFGDLDGDGVEDVAIAARCKNPMLDQAEHKYTVMDPYYDFFGYGDPKLTTTFSEGDPARRGLVVLIIHGAGKDGWRSATPKAKYVIVNLPYRTISIRKMGLRKRTIEAIYIEESGDMGDSSALFFDGRKFRYVPMGGNMQ
Ga0326728_100304879F023389AGGCGGMSPYRRVVILAAVLISIGRGKCDLWGQENAGQPSVLHIQHSVTTSKTGFPQFLYMYHVLDGAKSMAEAEALTGTISLQNYSPYFSEVLWLLAYWQDKCPVDDQTLAGANFIWTDILKNPSQSISNFPVNLKFPHPLPMTGCVGFVFGGGTLVKGKVTMSADLNLTYKPSSSEANTLVNLAGEYCFGQNWGCQNATTDDTEGFAVPVTMPAGHLVELFGNISDSTFDGTQNFGPLPTGKAWGAVNDFYLLPGGCGEFGENLNSQGFPYAVLLATLYSWLPQNALHLESVPLEYEIPRDETGKATLQKRVERIFSVPLTVNAGDCVVVIYGRKGDGATDNETQVWAVLAP
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