Basic Information | |
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Taxon OID | 3300033402 Open in IMG/M |
Scaffold ID | Ga0326728_10033121 Open in IMG/M |
Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8551 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008672 | Metagenome | 329 | Y |
F010661 | Metagenome | 300 | Y |
F011724 | Metagenome | 287 | Y |
F062368 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326728_100331213 | F062368 | GGAGG | MAVSVSLTEQFIEETLAGPYVKNAKLIVTGLTTGGNNSVPHGLNDGKGNAATPITVSIEPSSNNTFYEYQAADSTNIYVGVGAGSGTSCNIYVEY |
Ga0326728_100331214 | F011724 | GGAGG | MSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDRKARIRSALYARGIDPDAMALTPDQANFLRALNRDGAIADLADALQGNVSLQAGEDAHAAERRQSFERQVAEIKQGLYDKFFSQLARTVEIEPTLGGTAGGETDGSTARDRSENKAFSKDQVF |
Ga0326728_100331215 | F008672 | AGG | MWISYYNAGLSKQVVRQLLAVIKRDIQAALDFVSGAPGTYAPFAEYDLALLPVQQFPALLLTPDTVSVDEQANFTLHQSMRLTCVITVTHQDRNALAELIQDYVRAARAVLDSLWELTPGDFMLTSLPLPSPPFPQGALSPGLANGKLTGLFAERHTFEEIRRAPQSGFAMAATMSIVAEIEET |
Ga0326728_100331218 | F010661 | GAG | MTSGNEIATAADFRKLAQESAFEEARRVVLPVSGYAVRLRRPTKFYWALRRSGWPADLREKLDLVGVGVRTELTAEETLLLVREDRQMLSEAFVDPKPSLEPGASQFDPNWLPKEDGDFILKYLRGQVLANGQDLESFRRGKPEHIEGSGCDGPDVRQNTE |
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