Scaffold Ga0326728_10033882

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326728_10033882

Scaffold Ga0326728_10033882

Overview

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10033882 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8397
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040975	Metagenome	160	Y
F048047	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100338822	F040975	N/A	MILGNQTWQTGLTAPQKQPLYILQIPQFGVVLASFTQSQIQSLTQTGYGVMTWGVGGWGS
Ga0326728_100338825	F048047	GAGG	MSKQGVAKAEDFKRVVEHSNVEQVVLPASGLVVLLCRPPVFAGLAMGRAGTLLQSKITDAKPEEVKAEDVEKFTEWLTETLTRLFVQPRFNTSPAADEIGLADILIDDLKFIFRWLRGEVFSAGAGGWGLGAGENPSTQHLAPSTCAEDLGRFPGGQGAASVPGGSGEAQPLPPERTPGTLRDAGLSAGLHRG

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