NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10075581

Scaffold Ga0326728_10075581


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10075581 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4401
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035367Metagenome172Y
F038201Metagenome / Metatranscriptome166N
F045645Metagenome152N
F063278Metagenome129N
F063304Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100755812F035367GGCGGMLILVLDAVLCGFFGLGIAVMHFLWLEYATVRWPKVRYTDDYQMSFALACAAVVFALTTLRQIKTRLESKSLRPGEIGFILIFAAIVMVGMTPVPGSNFPQYLYEMNYPGNKDTSKQEPKSEEEAKPLKLKREFP
Ga0326728_100755814F063304N/AMRLNNSTPDRDVSPHIYNLLDQRLAQQGTPLHQLISAYAAAVPAQPGSPEELLNQLTAVLGKWAADPAHRVKPETALAEEHLRLMDDISKIQGPEGASRLEATLVRVVANQFARNMRSAMRIPDQSKLICLSDVKPVNAYSAFAQRTALIGIQPHEWVKRWVESQRDVFRNKPTDGGYLRLAQRLSGAWPAEPGQGDAFQKALATFLDGIASSTNHSHAVVVQSSLLDTFARAIRRQAQDLGLDRPAVPPPAMSVF
Ga0326728_100755815F063278N/AMKERYLIIGFQPPTRRISLDSERAENATDAMRAVAGMRKAADVLLAWTPGQMRHMADLLAAMTPRQIAFNRRSAELEERSFRASQMAPPPVHTGGPQSQPFLVISYTPDTEAVHLDTELNDSPDAALSSVAGIRSRAHVILAFTPEQLREMAANLEGLTAEQIAFNRRAAEQEEKTFYAELATWQ
Ga0326728_100755816F045645AGGMEVGPHKCGTEDLDMKLQETTLTALKSVAGVYAVRPIIRGKALALRQGRDGPELAQDEGQAVRVVAVSDLKPSLLSFAAINGIPVRNYTDMAVPKPRALSAPKPTEVPELVM
Ga0326728_100755817F038201N/AMDVFTRNVQFMVGQVAGEHAAQTFQMLQATFPGLRNFDQLRTFARLYVATGLQPLQFRPLPSDVDPQRLKGELALRFHNGMIVLTPEERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDQGHTLDPEACAPTAVAMFPLELS
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