NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10123423

Scaffold Ga0326728_10123423


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10123423 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2963
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F016632Metagenome / Metatranscriptome245Y
F027079Metagenome / Metatranscriptome195Y
F028392Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_101234233F027079AGGAGGVIKSFLNLCLILFLDTLAYMVAIVAAAAVAWAAVCGARWIFAAFRNSVMALRARRTKKEMCAHATR
Ga0326728_101234234F016632N/AMRRWSLTGILEVFALAEIGSGIGFLASWRNKVLKAKVNFFRQRNNRSSPFDKVLRGKVGRAVTRQDRLRLQLADGLVTLIRKLVQYDAFRQVVRGLALAHSPMRQALRKKGGRPW
Ga0326728_101234235F003859AGGAGMDELNSPREASRCGMIVAAYLRPVTGLYKSVKLGWNWRRLRWAVAAASEAAQGHEANGVRPGGQEFKTLYNEVVKKVEEYSHNSGDPIDTLKAKLPALCAIERLANPDPGVPQNKLGLTLGIIIAAVLGSIGMGALIGLGTGMAHWIAHLFA
Ga0326728_101234236F028392AGGAGGMAKTTVVIHLPEALRDGNSALVKLAGKVDSFSLVLWRTPEGQLKQQIEKEYHAMVFATRKEVRKYCPRYRYFPGEGILDFSTDCASGQLEPGDLGQAPPPKRGKLCHQCCFFLGEPEDQVAGIAATGSPRHLAPAN
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