NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10000010

Scaffold Ga0326727_10000010


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10000010 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1047584
Total Scaffold Genes944 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)739 (78.28%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000228Metagenome / Metatranscriptome1519Y
F000260Metagenome / Metatranscriptome1431Y
F003988Metagenome / Metatranscriptome458Y
F013543Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0326727_10000010519F000260GAGGMNWKSKLILGVLTALAMMLLTFALPRGGALRDEAVVQFPLTVGVWAIYVLLFVKLK
Ga0326727_10000010714F003988AGGAVKRLYTIGRVKGGMKFTCTHCAHNVSTLDFDPRDGNLRTQAATAINQHATSVHHEPVMFSSLDARQHIWRS
Ga0326727_10000010736F000228GAGGMFLVPCSCGTTFAVTEDYDHRGTAWSRYMICPGCGKRHDPKNRLLQVGYHREGYWQVDKC
Ga0326727_10000010900F013543GAGGMRRSEFCQRRGLSFSTLDRHLKKLRWKRRRKPISSAGRLVPVELAARRSPKRHEPSCGLAVVLPGGHRIEVHPDFDTNTFERLLSALGRV
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