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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033405 Open in IMG/M |
| Scaffold ID | Ga0326727_10000050 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 486585 |
| Total Scaffold Genes | 408 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 307 (75.25%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000634 | Metagenome / Metatranscriptome | 971 | Y |
| F000688 | Metagenome / Metatranscriptome | 937 | Y |
| F000987 | Metagenome / Metatranscriptome | 813 | Y |
| F001117 | Metagenome / Metatranscriptome | 773 | Y |
| F001591 | Metagenome / Metatranscriptome | 667 | Y |
| F009983 | Metagenome / Metatranscriptome | 310 | Y |
| F035035 | Metagenome | 173 | Y |
| F083076 | Metagenome / Metatranscriptome | 113 | N |
| F089726 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326727_10000050243 | F009983 | AGGA | MKKSQICAVVLLLVVGSVMAFADGINDPKVIIHGVNGDLSQDCDQCKLVGVNFSFSSPKGGSGPLFFTNASGKNWTSLALIESGEPAADISCVQTLFLNCSVTTLTSGKDKGDVEILLSGVRGGLNPRVGILAGQSFSITFNCAGGCWPKTPITFNGHATTAVPEPGTVALMVTGLGTLFSRRKLWKGRLSA |
| Ga0326727_10000050259 | F000688 | N/A | MTHFPHANVNQRSPRVQLHGSVAAAVLAEGGHRSRAKLQSISVNGGLLQLQQELSTGDFVEIAFHTRSGAIHGMAEMLHPTGKFQSACFQPFRFIALADDDHRKLRMALDSALDRSFLDPVSEQLQTPPGF |
| Ga0326727_10000050266 | F000987 | AGGAG | MSIQEVSAEQLAELFHHYHQALGPDFGFTTQATAESWEQISQQERKRMVEAARMTMLEVAGAPRAEEHSRRYFAKPGEAEWGC |
| Ga0326727_10000050305 | F001591 | GAG | MIRLSSSTVIKSKIQAGLGAKVDRRRERRLKLELPVRIWGVDKMARPFAELVRVRNVSNGGAVLVGVRSKVQEGEVLDVQHGASRAQFRIVWLNLSGEAGIQALAFEPPILGIGLPKAFAMVGTG |
| Ga0326727_10000050307 | F089726 | N/A | MSDEKVDLLCEHCGQAFSAFLHEMADHNAKVTSCPNCGKPNDCKPAKGPKSAASVRGKSG |
| Ga0326727_1000005035 | F000634 | AGGAGG | VPASANSTIKILYAESDDSTLSAQSAEMSHAGHQVTTALNRHAVQDALKRDGFDLVILGATLSKDDRHHLPYMVRKTNPETKILVMHAGTHHHEVDAVVDSNLSMNRILDKIATLLQPAV |
| Ga0326727_10000050378 | F001117 | GAGG | MPENLLLISTPFYRCSGPNCGVLKGGSDRWWIIWSSFGDYELPVMHLAPWDEKLALQEGAMHVCGEGCAQKLQSQFMGNVLQSRARRSGG |
| Ga0326727_1000005069 | F083076 | GGA | MYPSMAYKATTIEELIAIMKRVQGDKTLTQFAAELDLSKQYVSNVYNRHKEPSERLLGKLGFTRQTTYLRSPTAASRERKK |
| Ga0326727_1000005081 | F035035 | GGA | MLGPYETRLLRNKVSSRRKKDKRAYFLNDREVSMKCLATICFAMMTVTGTGAGQEATNTGRPESLPQPTGLRTVVGCLSKTADTYVVTGGAPGPKQFRIVSGNVSALKGKIGHTVKVVGMVGKNDALANQNGLYNEGSTTGVGYLTIEARKVSEVYGNCSEPGKEWAGEHN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |