NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10171830

Scaffold Ga0326727_10171830


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10171830 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2472
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059581Metagenome133N
F093111Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0326727_101718301F093111AGGVQILGNYQSTLSSSYYQQLVTLLQQAIQAGDFGGGQTFDQAALVALQKQAQNFSTLPQTSAGQVVTDESFNRPLTLLAAQFAALLNESNAFATQLTSLLSVLSKDTKLIDQLLAEAALQNWASTLPAMSGSTQIMWDFGAGYGPIAPA
Ga0326727_101718304F059581N/AMPWTDLRTGSLRRTELSTLDPFTGRVEVVPTVDTTDTIYGFYSYFEPDVVYTALDVNPVTNPSIKNTVICFYYRTTSSSLQEIYHQVFNDSGPIAGMTNDPNPPTWTGQVPSSGTVFAEMVVGVSFGIATFEMTDARTRGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTRAVVAGIVNSVLPMGTIAAVRYYDPEGNESV
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