Basic Information | |
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Taxon OID | 3300033405 Open in IMG/M |
Scaffold ID | Ga0326727_10582522 Open in IMG/M |
Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 938 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018889 | Metagenome / Metatranscriptome | 232 | Y |
F028728 | Metagenome / Metatranscriptome | 190 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326727_105825221 | F018889 | N/A | YLMAFSDAAGNALEPIMVIDNKDKAIVAEADVRKLVRDARERKHPVAVLVTREESQLRHVDRQCRWAQEDGVWLLRSTRAWLPRDLEVLRPVFERMRAEGPDFLQRNAALANEVQRTFTDMDEIEGQLKKAGTAIEKAQALTAKYRARLTGLCGSAAAGQEMTGKPVGKNGRASAGNGNGTLERQQVNQ |
Ga0326727_105825222 | F028728 | AGGAGG | MKLEHKTLVTSDGKKIVTGTWKTDSGKPISQIITSTDLKSGKVKVTNVSGGKLLP |
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